Datamonkey Adaptive Evolution Server

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MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
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[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
[n1:128879] PMIX ERROR: UNREACHABLE in file server/pmix_server.c at line 1741
HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
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HyPhy killed by signal 15


HYPHYMPI terminated.
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HyPhy killed by signal 15


HYPHYMPI terminated.
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HyPhy killed by signal 15


HYPHYMPI terminated.
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HyPhy killed by signal 15


HYPHYMPI terminated.
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HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


HYPHYMPI terminated.
Error:
HyPhy killed by signal 15


[n1:128879] 25 more processes have sent help message help-mpi-api.txt / mpi-abort
[n1:128879] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages

Analysis Description -------------------- aBSREL (Adaptive branch-site random effects likelihood) uses an adaptive random effects branch-site model framework to test whether each branch has evolved under positive selection, using a procedure which infers an optimal number of rate categories per branch. - __Requirements__: in-frame codon alignment and a phylogenetic tree - __Citation__: Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection (2015). Mol Biol Evol 32 (5): 1342-1353. v2.2 adds support for multiple-hit models. v2.3 adds support for SRV - __Written by__: Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM / UCSD viral evolution group - __Contact Information__: spond@temple.edu - __Analysis Version__: 2.3 >code –> Universal Error: Master node received an error:The format of the sequence file has not been recognized and may be invalid Function call stack 1 : [namespace = YtrjlxIW] DataSet ^dataset_name = ReadDataFile(PROMPT_FOR_FILE); Keyword arguments: { "branches":"FG", "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json", "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre" } ------- 2 : [namespace = MzBSGWIg] code_info=alignments.LoadGeneticCode(None); Keyword arguments: { "branches":"FG", "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json", "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre" } ------- 3 : [namespace = CWpaKqRm] return alignments.ReadCodonDataSetFromPath(dataset_name,None); Keyword arguments: { "branches":"FG", "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json", "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre" } ------- 4 : return alignments.LoadCodonDataFile(dataset_name,datafilter_name,alignments.ReadCodonDataSet(dataset_name)); Keyword arguments: { "branches":"FG", "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json", "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre" } ------- 5 : [namespace = absrel] codon_data_info=alignments.PromptForGeneticCodeAndAlignment(prefix+".codon_data",prefix+".codon_filter"); Keyword arguments: { "branches":"FG", "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json", "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre" } ------- 6 : [namespace = absrel] load_file("absrel"); Keyword arguments: { "branches":"FG", "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json", "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre" } ------- 7 : namespace Step 0.LoadFunctionLibrary("modules/shared-load-file.bf", /home/datamonkey/datamonkey-js-server/production/app/absrel/../../.hyphy/res/TemplateBatchFiles/SelectionAnalyses/); Step 1.load_file("absrel");; Keyword arguments: { "branches":"FG", "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json", "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre" } -------

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