Analysis Description
--------------------
aBSREL (Adaptive branch-site random effects likelihood) uses an adaptive
random effects branch-site model framework to test whether each branch
has evolved under positive selection, using a procedure which infers an
optimal number of rate categories per branch.

- __Requirements__: in-frame codon alignment and a phylogenetic tree

- __Citation__: Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient
Detection of Episodic Diversifying Selection (2015). Mol Biol Evol 32
(5): 1342-1353. v2.2 adds support for multiple-hit models. v2.3 adds
support for SRV

- __Written by__: Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM /
UCSD viral evolution group

- __Contact Information__: spond@temple.edu

- __Analysis Version__: 2.3


>code –> Universal
Error:

Master node received an error:The format of the sequence file has not been recognized and may be invalid

Function call stack
1 :  [namespace = YtrjlxIW] DataSet ^dataset_name = ReadDataFile(PROMPT_FOR_FILE);

	Keyword arguments:
		{
		 "branches":"FG",
		 "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json",
		 "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre"
		}
-------
2 :  [namespace = MzBSGWIg] code_info=alignments.LoadGeneticCode(None);

	Keyword arguments:
		{
		 "branches":"FG",
		 "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json",
		 "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre"
		}
-------
3 :  [namespace = CWpaKqRm] return alignments.ReadCodonDataSetFromPath(dataset_name,None);

	Keyword arguments:
		{
		 "branches":"FG",
		 "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json",
		 "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre"
		}
-------
4 :  return alignments.LoadCodonDataFile(dataset_name,datafilter_name,alignments.ReadCodonDataSet(dataset_name));

	Keyword arguments:
		{
		 "branches":"FG",
		 "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json",
		 "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre"
		}
-------
5 :  [namespace = absrel] codon_data_info=alignments.PromptForGeneticCodeAndAlignment(prefix+".codon_data",prefix+".codon_filter");

	Keyword arguments:
		{
		 "branches":"FG",
		 "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json",
		 "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre"
		}
-------
6 :  [namespace = absrel] load_file("absrel");

	Keyword arguments:
		{
		 "branches":"FG",
		 "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json",
		 "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre"
		}
-------
7 :  namespace 

Step 0.LoadFunctionLibrary("modules/shared-load-file.bf", /home/datamonkey/datamonkey-js-server/production/app/absrel/../../.hyphy/res/TemplateBatchFiles/SelectionAnalyses/);

Step 1.load_file("absrel");;

	Keyword arguments:
		{
		 "branches":"FG",
		 "output":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.ABSREL.json",
		 "tree":"/home/datamonkey/datamonkey-js-server/production/app/absrel/output/63ca6712c82f520f6a311bc3.tre"
		}
-------