RELAX

aocc/1.3.0(13):ERROR:150: Module 'aocc/1.3.0' conflicts with the currently loaded module(s) 'aocc/2.1.0'
aocc/1.3.0(13):ERROR:102: Tcl command execution failed:   conflict aocc

openmpi/gnu/3.1.6(17):ERROR:150: Module 'openmpi/gnu/3.1.6' conflicts with the currently loaded module(s) 'openmpi/gnu/4.1.0'
openmpi/gnu/3.1.6(17):ERROR:102: Tcl command execution failed: conflict	openmpi


Check errors.log for execution error details.

multiple-files: No Analysis Description -------------------- RELAX (a random effects test of selection relaxation) uses a random effects branch-site model framework to test whether a set of 'Test' branches evolves under relaxed selection relative to a set of 'Reference' branches (R), as measured by the relaxation parameter (K). Version 2.1 adds a check for stability in K estimates to try to mitigate convergence problems. Version 3 provides support for >2 branch sets. Version 3.1 adds LHC + Nedler-Mead initial fit phase and keyword support. Version 3.1.1 adds some bug fixes for better convergence. Version 4.0 adds support for synonymous rate variation. Version 4.1 adds further support for multiple hit models. Version 4.1.1 adds reporting for convergence diagnostics. Version 4.5 adds support for multiple datasets for joint testing. - __Requirements__: in-frame codon alignment and a phylogenetic tree, with at least two groups of branches defined using the {} notation (one group can be defined as all unlabeled branches) - __Citation__: RELAX: Detecting Relaxed Selection in a Phylogenetic Framework (2015). Mol Biol Evol 32 (3): 820-832 - __Written by__: Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM / UCSD viral evolution g - __Contact Information__: spond@temple.edu - __Analysis Version__: 4.5 >code => Universal /home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6.tre /home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6.tre >Loaded a multiple sequence alignment with **42** sequences, **752** codons, and **1** partitions from `/home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6` Error: RELAX requires at least one designated set of branches in the tree. in call to assert(AYtyGOjN.option_count>=2, error_msg); Function call stack 1 : assert(AYtyGOjN.option_count>=2, error_msg); Keyword arguments: { "kill-zero-lengths":"No", "mode":"Classic mode", "models":"All", "output":"/home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6.RELAX.json", "rates":"3", "reference":"REFERENCE", "test":"TEST" } ------- 2 : ExecuteCommands("assert (`statement`, error_msg)", /home/datamonkey/datamonkey-js-server/production/app/relax/../../.hyphy/res/TemplateBatchFiles/libv3/); Keyword arguments: { "kill-zero-lengths":"No", "mode":"Classic mode", "models":"All", "output":"/home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6.RELAX.json", "rates":"3", "reference":"REFERENCE", "test":"TEST" } ------- 3 : [namespace = AYtyGOjN] io.CheckAssertion("`&option_count` >= 2","RELAX requires at least one designated set of branches in the tree."); Keyword arguments: { "kill-zero-lengths":"No", "mode":"Classic mode", "models":"All", "output":"/home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6.RELAX.json", "rates":"3", "reference":"REFERENCE", "test":"TEST" } ------- 4 : [namespace = relax] selected_branches=Call(settings[utility.getGlobalValue("terms.settings.branch_selector")],partitions_and_trees); Keyword arguments: { "kill-zero-lengths":"No", "mode":"Classic mode", "models":"All", "output":"/home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6.RELAX.json", "rates":"3", "reference":"REFERENCE", "test":"TEST" } ------- 5 : [namespace = relax] load_file({utility.getGlobalValue("terms.multiple_files"):multiple_files,utility.getGlobalValue("terms.prefix"):"relax",utility.getGlobalValue("terms.settings"):{utility.getGlobalValue("terms.settings.branch_selector"):"relax.select_branches"}}); Keyword arguments: { "kill-zero-lengths":"No", "mode":"Classic mode", "models":"All", "output":"/home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6.RELAX.json", "rates":"3", "reference":"REFERENCE", "test":"TEST" } ------- 6 : namespace Step 0.LoadFunctionLibrary("modules/shared-load-file.bf", /home/datamonkey/datamonkey-js-server/production/app/relax/../../.hyphy/res//TemplateBatchFiles/SelectionAnalyses/); Step 1.load_file({utility.getGlobalValue("terms.multiple_files"):multiple_files,utility.getGlobalValue("terms.prefix"):"relax",utility.getGlobalValue("terms.settings"):{utility.getGlobalValue("terms.settings.branch_selector"):"relax.select_branches"}}); Step 2.LoadFunctionLibrary("modules/grid_compute.ibf", /home/datamonkey/datamonkey-js-server/production/app/relax/../../.hyphy/res//TemplateBatchFiles/SelectionAnalyses/);; Keyword arguments: { "kill-zero-lengths":"No", "mode":"Classic mode", "models":"All", "output":"/home/datamonkey/datamonkey-js-server/production/app/relax/output/67ce93bbc7c3b6a8ab8185b6.RELAX.json", "rates":"3", "reference":"REFERENCE", "test":"TEST" } -------